Transforming protein purification workflows through lab automation

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July 2, 2025  |  Technology

Protein purification is the heartbeat of proteomics and antibody discovery. But let’s be honest, traditional manual workflows can feel like a slog. They’re time-consuming, error-prone, and difficult to scale. These challenges can slow down discovery pipelines and introduce variability that can ultimately impact your lab’s results.

Fortunately, there’s now a better way. Automated protein purification, coupled with cutting-edge orchestration software, is transforming the landscape of proteomics laboratories. Imagine a seamless integration of instruments that eliminates bottlenecks, enhances reproducibility, and accelerates the journey from sample collection to breakthrough insights.

Automation shortens the path from sample to insight, while increasing reliability and reproducibility at every step. Welcome to the future of proteomics, where efficiency meets innovation.

Why Protein Purification Needs Automation

Protein purification is notoriously challenging, characterized by its repetitive nature and sensitivity to even the slightest variations. Imagine spending hours meticulously preparing buffers and handling samples, only to discover that a minor inconsistency has dramatically impacted your yield or quality. Frustrating, isn’t it?

As the demand for reproducible, high-throughput protein purification soars in both academic and industrial labs, the limitations of traditional manual workflows become glaringly apparent. These methods are not just labor-intensive; they often lead to incomplete documentation, are tough to scale, and are unfortunately more susceptible to human error.

Enter lab automation. Automated protein purification systems are revolutionizing the way we approach protein purification, addressing these challenges head-on. By enhancing traceability and minimizing hands-on time, these advanced setups foster increased consistency, efficiency, and quality control right from the early stages of protein discovery. Adopting automation in protein purification is a pivotal step forward for research and development.

Explore the fundamentals of lab automation.

Common Challenges in Protein Purification Workflows

In the realm of protein purification, even the most seasoned laboratory technicians encounter hurdles that can disrupt their efforts. Let’s explore some of these common challenges that can impact the quality and efficiency of your workflows:

1. Sample Loss or Degradation

Imagine working meticulously on your experiments, only to face setbacks due to inconsistent pipetting, unexpected temperature changes, or delays during handoffs. These factors can lead to significant sample loss or degradation, leaving you frustrated and questioning the results.

2. Process Bottlenecks

Smooth, coordinated workflows are essential for timely, successful protein purification, yet manual transitions between crucial steps—like centrifugation, filtration, chromatography, and analysis—can create unwelcome delays.

3. Limited Data Traceability

In today’s data-driven world, keeping track of critical information is vital. However, many labs still rely on disconnected spreadsheets or handwritten notes. This can create inconsistent records, making it difficult to trace essential data and undermining the integrity of your findings.

4. Limited Scalability

Expertise is invaluable, but relying solely on seasoned scientists can limit your ability to scale operations across various experiments, protocols, or teams. This can hinder innovation and slow down the pace of your research.

These challenges extend beyond individual steps; they can compromise the reliability of your entire workflow. By addressing these obstacles, you can enhance your protein purification processes and pave the way for more successful and reproducible results.

Discover how automation can help laboratories scale their operations efficiently.

Key Benefits of Automating Protein Purification

What if every sample could be handled with precision and consistency from start to finish? By seamlessly coordinating multiple instruments into a cohesive workflow, protein purification automation takes center stage, dramatically reducing the risk of human error, cross-contamination, and workflow bottlenecks. With this integrated, automated approach, every member of your team can be confident that samples remain pristine from start to finish, with features like:

1. Increased Throughput

Automated systems can process dozens or even hundreds of samples simultaneously, allowing your lab to scale operations without increasing headcount. This capability is particularly beneficial in antibody discovery, where large sample libraries must be purified under consistent conditions.

2. Better Reproducibility

Automation reduces variability by standardizing each step of the purification process. From buffer exchanges to wash protocols, every sample undergoes the same treatment, resulting in more consistent and reliable data.

3. Improved Data Integrity

With automatic tracking of every action, your team gains complete visibility into purification parameters, timelines, and sample conditions. This efficiency enhances compliance and makes it simpler to replicate or troubleshoot results.

4. Fewer Manual Handoffs

By coordinating multiple instruments into a unified workflow, automated protein purification minimizes the risk of human error, cross-contamination, and workflow delays. This way, everyone in your lab can ensure that samples remain intact from start to finish.

What an Automated Protein Purification Workflow Looks Like

A fully automated protein purification workflow is a game changer, integrating several key steps to elevate your research experience, like:

  • Sample Preparation: Eliminate repetitive manual steps with automated preparation tools. With cutting-edge automated filtration, centrifugation, and automated affinity chromatography platforms, you can kickstart your experiments with precision and speed.
  • Buffer Exchange or Desalting: Automation enables seamless buffer exchange and desalting, ensuring your samples are primed for the next step.
  • Downstream integration: Gain real-time insight into sample quality using integrated downstream systems. Whether using LC-MS or UV-based analytical systems, you can make informed decisions in real-time, enhancing the reliability of your results.
  • Smart Workflow Coordination: By integrating lab automation software like Green Button Go Scheduler and Green Button Go® Orchestrator. These powerful platforms expertly manage the scheduling, tracking, and optimization of all tasks and instruments, freeing you to focus on what really matters: your research.
  • Modular Design for Customization: Embrace flexibility with a modular design that can be tailored to various protein types and project goals. Whether you’re scaling up or exploring new avenues, this adaptable workflow supports your unique objectives.

Learn how orchestration software drives efficiency.

How Biosero Supports Protein Purification Automation

At Biosero, we’re not just about automation; we transform complex workflows into efficient, connected systems. With our cutting-edge Green Button Go (GBG) Orchestrator, you can take control of your research like never before.

Our machine-agnostic platform effortlessly integrates with any tool or instrument you use, from liquid handlers and automated chromatography systems to centrifuges and analyzers. Here’s what else you can expect when you harness the power of GBG:

  • Smart Integration: Integrate your preferred tools into a unified platform, eliminating the need for cumbersome manual processes.
  • Intelligent Workflow Scheduling: Keep your instruments running at peak performance, maximizing utilization while minimizing downtime.
  • Consistency & Reproducibility: Reduce variability and eliminate human error, ensuring that every sample delivers reliable results.

Whether purifying monoclonal antibodies or exploring early-stage proteomics workflows, our solutions are designed to scale alongside your ambitious research goals.

Real-World Applications of Protein Purification Automation

A leading antibody discovery team was experiencing increasing delays and inconsistencies in protein purification due to manual handoffs between Hamilton liquid handlers and automated chromatography systems. To address this issue, Biosero helped them streamline their workflow using Green Button Go, enabling automated scheduling and coordination between instruments. The result? The team achieved higher throughput, reduced manual effort, and consistent purification runs across multiple campaigns.

Read the full success story.

Ready to Accelerate Your Proteomics Pipeline?

In the dynamic world of research, the pace is relentless, and innovation waits for no one. That’s why automation isn’t just an option anymore; it’s a game-changer. If you’re looking to boost your lab’s speed, scalability, and data integrity, look no further. At Biosero, we’re on a mission to elevate your proteomics workflow from basic sample preparation to extraordinary breakthroughs.

Our team of automation specialists is dedicated to crafting solutions that truly fit your unique needs. Here’s how we can help transform your research:

  • Design Tailored Purification Workflows: Let us engineer solutions that not only work but thrive in your specific environment, ensuring you get the best results every time.
  • Seamless System Integration: We understand that efficiency is key. Our expertise ensures that your systems from various vendors work together harmoniously, minimizing downtime and maximizing productivity.
  • Advanced Orchestration Software: With our cutting-edge Green Button Gosoftware, you’ll enjoy comprehensive traceability and increased throughput, so you can focus on what matters most—your discoveries.

If you’re interested in learning how GBG could fit into your lab, contact us today for a consultation, and let’s unlock the full potential of your proteomics pipeline together!

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